DreEX0051443 @ danRer10
Exon Skipping
Gene
ENSDARG00000003165 | nr2f6b
Description
nuclear receptor subfamily 2, group F, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-2351]
Coordinates
chr11:6118414-6120222:+
Coord C1 exon
chr11:6118414-6118610
Coord A exon
chr11:6119626-6119788
Coord C2 exon
chr11:6119872-6120222
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTCCTGTGAAAAGGGC
3' ss Score
5.73
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CGAAGCTTGTTGGCCAGTCACCACAGACGCTCGGGTCAGCTGTCTCTCCTGACCGCTGGATCTCATGATTTACTGATGAATGGAGAAAGGCAAGGGACGGGAAGCAGCAAATGGTTAAAAGAGCTTTGCTTTGGCTCCTAGGAATGCTGAGGCCCTGGAGACCATACAGCTGGACACACCGGCACTAACAAAACAAG
Seq A exon
GGCGAGGTAAGCTGTCCAACTCTCAGCTGCTCATTGATTCAAAGCAATCTTGGGATCTTCAGAGACTTTTTTGTGGTTAGAGGACAAGAAGAAAAGCACCGGGATGAGTGTTCCCCTGACAGGATTTTGATATGACATTTGGCGGCAAAAACATGTCAGCCTG
Seq C2 exon
CTTAAAGGGATTCGCTCCAGGGCGGCTCTGAATTCTCGACGCAGGAAGGTTTCTCGAGCAGCTCCTGCTGGTGTACACAGAGATGGCCATGGTGAGCGGGGGATGGGCCAACCCCAATGGCAGTGCTAATGGACTCGGTGAGAAAGGTTACCTGCGGGGGGAGGAGGAGGGAAGCTCGCCCCAGGCAGGGAACAGCGATGTGGAAGGTGGCGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTTGTGTGTGGAGACAAATCCAGCGGGAAGCACTATGGTGTTTTCACCTGTGAAGGGTGCAAGAGTTTCTTCAAAAGGAGCATCAGACGGAACCTCAACTACACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003165_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.274
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(55.7=43.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGACCATACAGCTGGA
R:
CTTCCACATCGCTGTTCCCTG
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]