DreALTA0019890-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003449 | pde10a
Description
phosphodiesterase 10A [Source:ZFIN;Acc:ZDB-GENE-040426-1115]
Coordinates
chr13:4479939-4482588:+
Coord C1 exon
chr13:4479939-4480094
Coord A exon
chr13:4482416-4482418
Coord C2 exon
chr13:4482419-4482588
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GATCTCTTTTTTTCCCATAGCTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
AGGAAAGGGTTGCTGATTGCCTGTTTATGTCATGACCTGGACCACCGCGGCTACAGTAACAGTTACCTGCAGAAGTTTGACCATCCGCTGGCAGCCCTGTATTCCACATCCACCATGGAACAGCATCATTTTTCACAGACCGTGTCCATCCTGCAG
Seq A exon
CTG
Seq C2 exon
GAAGGGCACAATATTTTCTCCAACCTGACTTCCGGTGAGTATGAACAGGTGCTGGAGATCATCAGGAAGGCCATCATTGCCACAGACCTCGCTCTGTACTTCGGCAACCGCAAGCAGCTGGCTGAACTGCTGTCTACAGGGGCGCTCGACCTGAACAACCGCGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003449-18-24,18-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(21.7=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(23.8=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCTGTATTCCACATCC
R:
ACCGGAAGTCAGGTTGGAGAA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]