GgaALTA1023405-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42608022-42611637:+
Coord C1 exon
chr3:42608022-42608177
Coord A exon
chr3:42611465-42611471
Coord C2 exon
chr3:42611472-42611637
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGTTTTTTACTTTTTCATAGCTG
3' ss Score
6.7
Exon sequences
Seq C1 exon
CGAAAAGGTCTTTTAGTTGCATGCCTATGTCATGACCTGGATCACAGAGGTTACAGCAACAGCTATCTTCAGAAGTTTGATCACCCTCTAGCTGCTCTCTATTCCACATCAACGATGGAACAGCACCACTTCTCACAAACTGTGTCCATCCTGCAG
Seq A exon
CTGGAAG
Seq C2 exon
GGCACAATGTCTTCTCCAATTTGAGCTCCAGTGAATATGAGCAAGTCCTTGAGATTATTCGGAAAGCCATCATCGCCACAGACCTTGCCCTGTATTTTGGAAATAGAAAACAGCTTGAAGAGCTGCATCAGGCAGGAGCATTAAACCTTAAGAACCAAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537-28-35,28-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(21.6=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACTGTGTCCATCCTGCA
R:
TCTGTGGCGATGATGGCTTTC
Band lengths:
104-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]