DreALTA0021093-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3537686-3538034:+
Coord C1 exon
chr6:3537686-3537773
Coord A exon
chr6:3537959-3538004
Coord C2 exon
chr6:3538005-3538034
Length
46 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
ACTGTTTTTGTGTTCGTTAGATT
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
Seq A exon
ATTTATATTTACATTCTGCCTCACTGTTTTGTGTCCCTGACCATAG
Seq C2 exon
AACTACTAAACCAACTCCTCACTTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-8-10,8-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAATGAAACATACCAAGGAGTTCC
R:
CCGTCCAAGTGAGGAGTTG
Band lengths:
108-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]