DreALTA0021093-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3537686-3538034:+
Coord C1 exon
chr6:3537686-3537773
Coord A exon
NA
Coord C2 exon
chr6:3538005-3538034
Length
0 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTTTGTGTCCCTGACCATAGAAC
3' ss Score
8.29
Exon sequences
Seq C1 exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
Seq A exon
NA
Seq C2 exon
AACTACTAAACCAACTCCTCACTTGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-8-10,8-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAATGAAACATACCAAGGAGTTCC
R:
CCGTCCAAGTGAGGAGTTG
Band lengths:
108-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]