HsaALTA1029390-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169608671-169614493:+
Coord C1 exon
chr2:169608671-169608758
Coord A exon
NA
Coord C2 exon
chr2:169614464-169614493
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TATCTGATGATTTCCAAAAGAAC
3' ss Score
1.79
Exon sequences
Seq C1 exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
Seq A exon
NA
Seq C2 exon
AACAACGAAACCAACTCCTCATTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-23-25,23-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.495
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100),PF095075=CDC27=PU(8.5=60.0)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100),PF095075=CDC27=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGTTTCGCTGTTAAACACA
R:
CCATCTAAATGAGGAGTTGGTTTCG
Band lengths:
117-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains