BtaALTA0023077-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26709775-26714769:-
Coord C1 exon
chr2:26714682-26714769
Coord A exon
NA
Coord C2 exon
chr2:26709775-26709804
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
TATTTGATGACTTCCAAAAGAAC
3' ss Score
-0.08
Exon sequences
Seq C1 exon
ATGAGAGTTTTGCTGTTAAACACAATAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGCTCACAGTTCTTCAT
Seq A exon
NA
Seq C2 exon
AACAACAAAACCAACTCCTCATTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789-9-12,9-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTTTTGCTGTTAAACACA
R:
CCATCTAAATGAGGAGTTGGTTTTGT
Band lengths:
117-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development