DreALTA0021560-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000057583 | prrc2c
Description
proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
Coordinates
chr20:15153808-15154900:-
Coord C1 exon
chr20:15154318-15154900
Coord A exon
NA
Coord C2 exon
chr20:15153808-15153983
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
AAAATGTTTTCCTCTTTCAGTTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGAAACGGAAGCATGGCGACAGAAACGAAAGAAGCAGTCAGAGCTCTCTGAAGCAGTGGAACGTGCTCGTAGACGCCGTGAGGAGGAGGAGCGGCGGATGGAGGAGCAAAGGCTTGCTGCATGCAAAGAGAAGCTTAAACAACTAGAGGAGAAAAGACGACCTTCGACCACAGAGGCTACTAAACCAGCTACGCAAGCTCACAGCGACCACCAGGAAGTGACTGAAATTGTGCCTAAACTACCTGCTGAAACTCCGCCCCCTCAACCTCAGCCACCACCTCTGCCTGCACAGCTACCCTGCCCTCCCATGCCAACTCATGAAAGGACAGAGCCCACTGTGGAAGAGGTGCCACAATTCATTACCCGGCAACCTAGCCCTCCTGTTCTTAGGACTATCCCAGAACCCCAAATCAAGGCTGATACTGCTGTAGCTGAGGAGGTGCATGGACAGGTGGAGAGACCGCCAATGAGAGACTACTTCTGTGCTGAGGAGCCCAGAG
Seq A exon
NA
Seq C2 exon
TTGAGGAGCCTCAGTTGTCATTGTCCAGACTAGATCATTCTGTTAGCGAAGATGTTCCACTTCCATCTCAACTGGAGAATGAAGGAGATGCTGGGACTTCCATTCGTCCTTCTGTAACCTCTGGATACTCAAAACAGTTCCAGAAATCTCTGCCACCTAGGTTCCTTAGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057583-10-14,10-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCTGTGCTGAGGAGCCC
R:
TGGAAGTCCCAGCATCTCCTT
Band lengths:
127-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]