Special

MmuALTA0014273-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000040225 | Prrc2c
Description
proline-rich coiled-coil 2C [Source:MGI Symbol;Acc:MGI:1913754]
Coordinates
chr1:164639660-164640960:-
Coord C1 exon
chr1:164640414-164640960
Coord A exon
NA
Coord C2 exon
chr1:164639660-164639817
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTACTGTTTCTTTGAGCAGAAG
3' ss Score
5.84
Exon sequences
Seq C1 exon
TCCCTCCAAGCCTCCAGTACCTGATAACGATGAAATATGGAAGCAAAGACGAAAACAACAGTCTGAAATATCTGCAGCAGTAGAGCGTGCTCGTAAACGCCGTGAGGAGGAAGAGCGAAGGATGGAGGAACAGAGGAAGGCAGCGTGCGCAGAGAAATTGAAGCAGCTGGATGAGAAGCTCGGGATCATAGAAAAGCAGCCATCTCCAGAGGAACTTAGAGAAAGGGAGAGAGAGAAGGAGCGGGAGAGAGAACTTGAAAAAGAGAAAGAGCGGGAGCTTGAGAAAGAGCAGGAAAAGCAGAGGGAAATGGAGAGGGCAAGACAGCAAGAGAAAGAGTTAGAACAACAGAGAGAAAAGGAGCAGGAACTACAAAGGCTGAGAGAACAGGAAAAGGAGGGCGAGCCAAAGGAACAGGAAAAAGAGGAAAAAGTTGAACCCCAAGAGCCTGTTGTAGAGCCTGCGACAGAAAACCAAGAAAGTGAAAACAACTGCAAGAAAG
Seq A exon
NA
Seq C2 exon
AAGAAGAACCAATTTTCACTAGGCAGGACAGCAATCGCAGTGAAAAGGAGACCACACAAGTGGTACAAGAAGCAGAACCTGAATCGGGGGCTCAACCTCGACCTGGCTATTTCAAACAGTTTCAGAAATCATTGCCACCACGATTTCAGCGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040225-15-19,15-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000028016





     
                   









    
Main Skipping Isoform:
ENSMUSP00000038999





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000028016f5784A
          









    
Other Skipping Isoforms:
ENSMUSP00000038401
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:171504565-171504566 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:39893576-39893577 
Chicken
(galGal4)
chr8:4752472-4752473 
ALTERNATIVE
GgaALTA1025551-2/2
(PRRC2C)
Chicken
(galGal3)
chr8:4894279-4894448 
ALTERNATIVE
GgaALTA0001602-2/2
([1])
Zebrafish
(danRer10)
chr20:15153984-15153985 
HIGH PSI
DreALTA0021560-1/2
(prrc2c)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCCCAAGAGCCTGTTGTAGA

				
R: 
CGATTGCTGTCCTGCCTAGTG

				
Band lengths: 
102-105

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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