DreALTA0022214-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079046 | rabl6a
Description
RAB, member RAS oncogene family-like 6a [Source:ZFIN;Acc:ZDB-GENE-030131-6174]
Coordinates
chr5:5162912-5169859:-
Coord C1 exon
chr5:5169812-5169859
Coord A exon
NA
Coord C2 exon
chr5:5162912-5162964
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTTTTTCCAACTACTGCAGGGA
3' ss Score
8.24
Exon sequences
Seq C1 exon
CAACAGATGATGTAGTGAAAGTTGAAGTCTGGGACGTGGTGGATAAAG
Seq A exon
NA
Seq C2 exon
GGAAAGGCAAAAGACGCGGGGAAAATCTGAAACTGGAAAACGAACCGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079046-5-8,5-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.737
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.8=100)
A:
NA
C2:
PF084778=Miro=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTAGTGAAAGTTGAAGTCTGGG
R:
CCTGCGGTTCGTTTTCCAGTT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]