MmuALTA0002462-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015087 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25598145-25601398:-
Coord C1 exon
chr2:25601351-25601398
Coord A exon
chr2:25598193-25598197
Coord C2 exon
chr2:25598145-25598192
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTGTTTGTCTTTTAATAAGGAA
3' ss Score
5.87
Exon sequences
Seq C1 exon
CTACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
GAAAG
Seq C2 exon
TGTAAAAAACGAGGAGATGGCTTGAAGACGGAAAATGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
NA
C2:
PF084778=Miro=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGATGTAGTGAAAGTTGAAGT
R:
TCCTGGGGGTCATTTTCCGTC
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types