DreALTA0022755-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:7980798-7982361:-
Coord C1 exon
chr6:7982284-7982361
Coord A exon
NA
Coord C2 exon
chr6:7980798-7980884
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CAGATTTTTTTTTCTAGCAGAGC
3' ss Score
5.14
Exon sequences
Seq C1 exon
GAGGGAAACCAGGCAGCGGATGTAGAAACTCACTCTGCTCCAAAGTCTCCCAGACTCAGTCCTACGTGTAAGCACATG
Seq A exon
NA
Seq C2 exon
AGCTCGTCCAGTGGTGAGGTGCCGTACCTGGGCACTTATCTGACCGTTCTCACCATGCTGGACACAGCGCTGACTGACAATGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213-23-22,23-21,23-20-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(10.9=100)
A:
NA
C2:
PF0061714=RasGEF=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGCTCCAAAGTCTCCCA
R:
CAGCATGGTGAGAACGGTCAG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]