GgaALTA1000408-1/2 @ galGal4
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6792366-6792616:-
Coord C1 exon
chr17:6792539-6792616
Coord A exon
NA
Coord C2 exon
chr17:6792366-6792452
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATCCCTCGCTGTCCCCCAGGGT
3' ss Score
9.05
Exon sequences
Seq C1 exon
GAGGGCACGTCCAAATTTGCCACCTTGGAGATCAACCCAAAGAGGGCCCAGAAGCGGCAGCAGCAGCAGAGAGAGATG
Seq A exon
NA
Seq C2 exon
GGTGTGATGCAGGGCACCATTCCCTATCTCGGCACCTTCCTCACGGACCTGGTGATGCTCGACACCGCCATGAAGGATTTCCTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412-20-19,20-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.5=100)
A:
NA
C2:
PF0061714=RasGEF=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCAGCAGAGAGAGATG
R:
GGAAATCCTTCATGGCGGTGT
Band lengths:
103-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]