DreALTA0023266-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019230 | rpl7a
Description
ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9]
Coordinates
chr5:32684568-32684962:-
Coord C1 exon
chr5:32684883-32684962
Coord A exon
NA
Coord C2 exon
chr5:32684568-32684593
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCATACTGCATCGTCAAGGGC
3' ss Score
0.92
Exon sequences
Seq C1 exon
GTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAG
Seq A exon
NA
Seq C2 exon
GGCAAGGCCAGACTGGGCAGACTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019230-11-7,11-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=FE(27.4=100)
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACACTGTGACCACGCTTG
R:
ACCAGTCTGCCCAGTCTG
Band lengths:
103-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]