HsaALTA0007343-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Coordinates
chr9:136217095-136217550:+
Coord C1 exon
chr9:136217095-136217174
Coord A exon
chr9:136217512-136217517
Coord C2 exon
chr9:136217518-136217550
Length
6 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TCCCTTACTGCATTATCAAGGGA
3' ss Score
3.36
Exon sequences
Seq C1 exon
GAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGACGTGGATCCCATCGAG
Seq A exon
GGAAAG
Seq C2 exon
GCAAGACTGGGACGTCTAGTCCACAGGAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=PD(58.1=92.6)
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=PD(4.3=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACACCGTCACCACCTTGG
R:
TCTTCCTGTGGACTAGACGTC
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)