HsaALTA0007342-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Coordinates
chr9:136216767-136217550:+
Coord C1 exon
chr9:136216767-136216907
Coord A exon
chr9:136217452-136217543
Coord C2 exon
chr9:136217544-136217550
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGCTAATGCTTTCTTCCAGCTG
3' ss Score
6.52
Exon sequences
Seq C1 exon
CTACTCAGCTGCTTAAGCTGGCCCACAAGTACAGACCAGAGACAAAGCAAGAGAAGAAGCAGAGACTGTTGGCCCGGGCCGAGAAGAAGGCTGCTGGCAAAGGGGACGTCCCAACGAAGAGACCACCTGTCCTTCGAGCAG
Seq A exon
CTGGTTGTCTTCTTGCCTGCCCTGTGTCGTAAAATGGGGGTCCCTTACTGCATTATCAAGGGAAAGGCAAGACTGGGACGTCTAGTCCACAG
Seq C2 exon
GAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-7-12,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=PU(17.9=35.4)
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=FE(45.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)