GgaALTA1027624-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003197 | RPL7A
Description
60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:P32429]
Coordinates
chr17:6867685-6868167:+
Coord C1 exon
chr17:6867685-6867764
Coord A exon
chr17:6868045-6868063
Coord C2 exon
chr17:6868064-6868167
Length
19 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CACACTCTCTCTCTTTTCAGCTG
3' ss Score
12.57
Exon sequences
Seq C1 exon
GTGTTAACACTGTCACAACTCTGGTAGAGAACAAGAAAGCTCAGCTTGTGGTGATTGCCCATGATGTAGACCCCATTGAG
Seq A exon
CTGGTGGTCTTCTTGCCAG
Seq C2 exon
CTCTGTGCCGCAAGATGGGAGTGCCATACTGCATCATCAAGAGCAAGGCCAGGCTGGGGCGACTGGTGCACAGGAAAACTTGTACCTGTGTTGCTTTCACACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003197-6-12,6-11,6-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=FE(27.4=100)
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=FE(45.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATGATGTAGACCCCAT
R:
AGTTTTCCTGTGCACCAGTCG
Band lengths:
105-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]