HsaEX0055518 @ hg19
Exon Skipping
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Coordinates
chr9:136217095-136217926:+
Coord C1 exon
chr9:136217095-136217174
Coord A exon
chr9:136217512-136217574
Coord C2 exon
chr9:136217857-136217926
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCCTTACTGCATTATCAAGGGA
3' ss Score
3.36
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAGTTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGACGTGGATCCCATCGAG
Seq A exon
GGAAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACCACTGTCGCCTTCACACAG
Seq C2 exon
GGAAGACAAAGGCGCTTTGGCTAAGCTGGTGGAAGCTATCAGGACCAATTACAATGACAGATACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-'9-14,'9-10,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=PD(58.1=92.6)
A:
PF0124821=Ribosomal_L7Ae=PD(4.3=9.5)
C2:
PF0124821=Ribosomal_L7Ae=PD(7.4=29.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTAACACCGTCACCACCT
R:
GTAATTGGTCCTGATAGCTTCCACC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)