DreALTA0023268-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019230 | rpl7a
Description
ribosomal protein L7a [Source:ZFIN;Acc:ZDB-GENE-031001-9]
Coordinates
chr5:32686210-32686664:-
Coord C1 exon
chr5:32686544-32686664
Coord A exon
NA
Coord C2 exon
chr5:32686210-32686354
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CATTTTAATGTCCAGGTCAGGAC
3' ss Score
0.87
Exon sequences
Seq C1 exon
CCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTG
Seq A exon
NA
Seq C2 exon
GACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019230-4-2,4-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGTTGTGAACCCCCTGT
R:
GCCATTTCACGAATCGGGTCA
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]