GgaALTA1027620-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003197 | RPL7A
Description
60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:P32429]
Coordinates
chr17:6866152-6866847:+
Coord C1 exon
chr17:6866152-6866273
Coord A exon
chr17:6866703-6866758
Coord C2 exon
chr17:6866759-6866847
Length
56 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGTCTGTATTTGTAGGACAGGAT
3' ss Score
-0.68
Exon sequences
Seq C1 exon
GCCGAAAGGAAAAAAGGCCAAGGGCAAGAAGGTGGCACCTGCCCCTGCTGTAGTCAAGAAGCAGGAGGCCAAGAAGGTTGTCAATCCCCTCTTTGAGAAGAGGCCCAAGAACTTTGGCATTG
Seq A exon
GATATCCAGCCCAAGCGTGATCTCACCCGCTTTGTGAAATGGCCCCGCTACATCAG
Seq C2 exon
GCTGCAGCGCCAGCGCTCCATTCTGTACAAGCGCTTGAAGGTGCCCCCTGCAATCAACCAGTTCAGTCAGGCTTTGGACCGCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003197-2-2,2-1,2-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCAAGAAGCAGGAGGCCA
R:
TGAACTGGTTGATTGCAGGGG
Band lengths:
137-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]