DreALTA0023384-1/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019778 | rps6
Description
ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
Coordinates
chr1:44342801-44344123:-
Coord C1 exon
chr1:44343977-44344123
Coord A exon
NA
Coord C2 exon
chr1:44342801-44342896
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
TTACACCCCGTGTGCTGCAGCAC
3' ss Score
6.11
Exon sequences
Seq C1 exon
GTGAGAAGGATATTCCTGGGCTGACTGATAGCACTGTCCCTCGCCGTCTGGGACCCAAGAGGGCTAGCAGGATCCGCAAGCTCTTCAACCTGTCCAAAGAGGACGATGTCAGGCAGTATGTGGTCCGGAGACCTCTCACTAAAGAAG
Seq A exon
NA
Seq C2 exon
CACAAGCGCAGACGCATCGCTCTCAAGAGGCAGCGCACACTGAAGAACAAGGAGGCAGCAGCAGAATACACCAAACTGCTGGCCAAGAGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019778-10-15,10-14,10-13,10-12-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PD(7.9=20.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGGACGATGTCAGGC
R:
CTTGGCCAGCAGTTTGGTGTA
Band lengths:
141-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]