HsaALTA1063708-5/12 @ hg38
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
Coordinates
chr9:19376494-19378514:-
Coord C1 exon
chr9:19378368-19378514
Coord A exon
chr9:19376533-19376589
Coord C2 exon
chr9:19376494-19376532
Length
57 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTACTCCACGTGTCCTGCAGCAC
3' ss Score
7.96
Exon sequences
Seq C1 exon
GAGAGAAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGGGCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCAGTATGTTGTAAGAAAGCCCTTAAATAAAGAAG
Seq A exon
CACAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAG
Seq C2 exon
GCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-18-39,18-38,18-37,18-36,18-35,18-34,18-33,18-32,18-30,18-29,18-28,18-27-5/12
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PD(10.4=20.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAAAAGAGCTAGCAGAA
R:
CATTCTCTTGGCCAAAAGTTTAGCA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains