HsaALTA1028412-9/10 @ hg38
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
Coordinates
chr9:19376494-19380254:-
Coord C1 exon
chr9:19380190-19380254
Coord A exon
chr9:19376533-19376651
Coord C2 exon
chr9:19376494-19376532
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGAGTCCTTTGAATTTTTAGGTA
3' ss Score
8.81
Exon sequences
Seq C1 exon
GCTAAGCGGAAGTTGGCCCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAG
Seq A exon
GTAAGAAACCTAGGACCAAAGCACCCAAGATTCAGCGTCTTGTTACTCCACGTGTCCTGCAGCACAAACGGCGGCGTATTGCTCTGAAGAAGCAGCGTACCAAGAAAAATAAAGAAGAG
Seq C2 exon
GCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-0-39,0-38,0-37,0-36,0-35,0-34,0-33,0-32,0-31,0-28-9/10
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(1.8=50.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGCGGAAGTTGGCCCTCT
R:
TTCTCTTGGCCAAAAGTTTAGCA
Band lengths:
98-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains