HsaALTA0007392-7/7 @ hg38
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
Coordinates
chr9:19378774-19380254:-
Coord C1 exon
chr9:19380190-19380254
Coord A exon
chr9:19378786-19378918
Coord C2 exon
chr9:19378774-19378785
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTCATTGTATGCTCTTGCAGGGT
3' ss Score
9.78
Exon sequences
Seq C1 exon
GCTAAGCGGAAGTTGGCCCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAG
Seq A exon
GGTTATGTGGTCCGAATCAGTGGTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAACTGGAG
Seq C2 exon
AAAGAAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-0-13,0-12,0-11,0-10,0-9,0-8,0-7-7/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(1.8=50.0)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(72.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains