MmuALTA0015610-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028495 | Rps6
Description
ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159]
Coordinates
chr4:86856263-86856826:-
Coord C1 exon
chr4:86856538-86856826
Coord A exon
chr4:86856321-86856356
Coord C2 exon
chr4:86856263-86856320
Length
36 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTATTTTATGTTCAACGCAGGGT
3' ss Score
7.16
Exon sequences
Seq C1 exon
AAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTTCTATGAGAAGCGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAGGTAAGGTTGTTACCGGCATCCATGTCCCAGCTTGGCGAGCGCAAGGGCTGTTTTGGGTTAAGTTTCATTAATAGAACCAAGTTTGGGGAAATGGGCCGAAAGGACATGCTTCTTTCTTGCTTGCCGTACGGAATTCAGGGTCTTAAAAAAAGCCTTTCATGTTCATGCTAGTAAAACCGGGGTAGTCAGG
Seq A exon
GGTTATGTGGTCCGGATCAGCGGTGGGAATGACAAG
Seq C2 exon
CAAGGTTTTCCCATGAAGCAAGGTGTTCTGACCCATGGCAGAGTGCGCCTGCTGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028495-6-7,6-6,6-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.197
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTGCCGTACGGAATTCA
R:
CTCTGCCATGGGTCAGAACAC
Band lengths:
117-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types