MmuALTA0015610-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028495 | Rps6
Description
ribosomal protein S6 [Source:MGI Symbol;Acc:MGI:98159]
Coordinates
chr4:86502050-86502763:-
Coord C1 exon
chr4:86502627-86502763
Coord A exon
chr4:86502120-86502260
Coord C2 exon
chr4:86502050-86502119
Length
141 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTT
5' ss Score
2.39
3' ss Seq
TTATTTTATGTTCAACGCAGGGT
3' ss Score
7.16
Exon sequences
Seq C1 exon
CTGAACATCTCCTTCCCCGCCACCGGCTGTCAGAAGCTCATCGAGGTGGATGACGAGCGCAAGCTCCGCACCTTCTATGAGAAGCGCATGGCCACGGAAGTAGCCGCTGATGCTCTTGGTGAAGAGTGGAAGGTAAG
Seq A exon
GGTTATGTGGTCCGGATCAGCGGTGGGAATGACAAGCAAGGTTTTCCCATGAAGCAAGGTGTTCTGACCCATGGCAGAGTGCGCCTGCTGTTGAGTAAGGGGCATTCCTGTTACAGGCCAAGGAGAACTGGAGAGAGGAAG
Seq C2 exon
CGCAAGTCTGTTCGTGGATGCATTGTGGACGCTAATCTCAGTGTTCTCAACTTGGTCATTGTAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028495-4-4,4-3,4-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=FE(33.9=100)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(55.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACATCTCCTTCCCCGC
R:
TTTACAATGACCAAGTTGAGAACACT
Band lengths:
202-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: