HsaALTA1028414-3/6 @ hg38
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
Coordinates
chr9:19378774-19379618:-
Coord C1 exon
chr9:19379487-19379618
Coord A exon
chr9:19378786-19378802
Coord C2 exon
chr9:19378774-19378785
Length
17 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAGGGGCATTCCTGTTACAGACC
3' ss Score
6.33
Exon sequences
Seq C1 exon
CTGAACATCTCCTTCCCAGCCACTGGCTGCCAGAAACTCATTGAAGTGGACGATGAACGCAAACTTCGTACTTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACGCTCTGGGTGAAGAATGGAAG
Seq A exon
ACCAAGGAGAACTGGAG
Seq C2 exon
AAAGAAAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-6-13,6-12,6-11,6-10,6-9,6-8-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PU(14.6=93.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains