DreALTA0023384-4/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019778 | rps6
Description
ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
Coordinates
chr1:44342801-44344123:-
Coord C1 exon
chr1:44343977-44344123
Coord A exon
chr1:44342897-44342958
Coord C2 exon
chr1:44342801-44342896
Length
62 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GATCATGCTTTTTCTTGCAGGCA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTGAGAAGGATATTCCTGGGCTGACTGATAGCACTGTCCCTCGCCGTCTGGGACCCAAGAGGGCTAGCAGGATCCGCAAGCTCTTCAACCTGTCCAAAGAGGACGATGTCAGGCAGTATGTGGTCCGGAGACCTCTCACTAAAGAAG
Seq A exon
GCAAGAAGCCCAGGACTAAAGCCCCTAAGATTCAGCGTCTGGTTACACCCCGTGTGCTGCAG
Seq C2 exon
CACAAGCGCAGACGCATCGCTCTCAAGAGGCAGCGCACACTGAAGAACAAGGAGGCAGCAGCAGAATACACCAAACTGCTGGCCAAGAGGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019778-10-15,10-14,10-13,10-12-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PD(7.9=20.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGAGGACGATGTCAGGC
R:
CTTGGCCAGCAGTTTGGTGTA
Band lengths:
141-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]