GgaALTA1027753-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015082 | RPS6
Description
40S ribosomal protein S6 [Source:RefSeq peptide;Acc:NP_990556]
Coordinates
chrZ:33596220-33597287:-
Coord C1 exon
chrZ:33597141-33597287
Coord A exon
chrZ:33596310-33596377
Coord C2 exon
chrZ:33596220-33596309
Length
68 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GATTAATAACTTGTTTTAAGGCA
3' ss Score
3.25
Exon sequences
Seq C1 exon
GTGAGAAGGATATTCCTGGGCTGACAGACACAACTGTGCCTCGTCGTCTTGGTCCCAAGAGAGCTAGCAGGATCCGCAAGCTGTTCAATCTCTCTAAGGAAGATGATGTTCGCCAGTATGTTGTGAGGAAACCTCTGAATAAAGAGG
Seq A exon
GCAAGAAACCCAGGACCAAGGCTCCTAAGATCCAGCGACTAGTGACTCCTCGTGTTCTGCAACATAAG
Seq C2 exon
CGCAGACGTATTGCCCTGAAGAAGCAGCGCACTCAGAAGAACAAGGAGGAGGCAGCAGATTACGCGAAGCTCTTGGCAAAGAGAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015082-15-15,15-14,15-13,15-12-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=PD(7.9=20.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAAGAGAGCTAGCAGGA
R:
TTGCCAAGAGCTTCGCGTAAT
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]