HsaALTA1063707-1/8 @ hg38
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
Coordinates
chr9:19378408-19378918:-
Coord C1 exon
chr9:19378708-19378918
Coord A exon
NA
Coord C2 exon
chr9:19378408-19378412
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTCAATCTCTCTAAAGAAGATG
3' ss Score
0.39
Exon sequences
Seq C1 exon
GGTTATGTGGTCCGAATCAGTGGTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAGCGTTCTCAACTTGGTTATTGTAAAAAAAG
Seq A exon
NA
Seq C2 exon
ATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-13-23,13-22,13-21,13-20,13-19,13-18,13-16,13-15-1/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=FE(72.9=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains