DreALTA0023385-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019778 | rps6
Description
ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
Coordinates
chr1:44345709-44347748:-
Coord C1 exon
chr1:44347617-44347748
Coord A exon
chr1:44345740-44345784
Coord C2 exon
chr1:44345709-44345739
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
AACAGGGCTTCCCCATGAAGCAG
3' ss Score
1.18
Exon sequences
Seq C1 exon
CTCAATATCTCGTTCCCCGCCACCGGCTGCCAAAAGCTGATAGAAGTTGACGATGAACGCAAGCTGAGAATCTTCTACGAGAAGCGCATGGCCACAGAGGTGGCTGCAGACTCTCTGGGTGACGAGTGGAAG
Seq A exon
CAGGGTGTGCTGACCCATGGACGTGTGCGTCTCCTCCTCAGCAAG
Seq C2 exon
GGTCACTCTTGTTACCGTCCTCGCCGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019778-5-6,5-5,5-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=FE(33.9=100)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(55.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCCAAAAGCTGATAGAA
R:
GCGAGGACGGTAACAAGAGTG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]