GgaALTA1027756-2/6 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015082 | RPS6
Description
40S ribosomal protein S6 [Source:RefSeq peptide;Acc:NP_990556]
Coordinates
chrZ:33597945-33599023:-
Coord C1 exon
chrZ:33598892-33599023
Coord A exon
chrZ:33598030-33598032
Coord C2 exon
chrZ:33597945-33598029
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AACAAGGCTTCCCCATGAAGCAG
3' ss Score
0.17
Exon sequences
Seq C1 exon
CTCAACATCTCTTTCCCAGCCACTGGCTGCCAGAAGCTTATTGAAGTGGATGATGAGCGCAAGCTGAGAACATTCTATGAGAAGCGAATGGCCACGGAGGTTGCGGCTGATTCTCTTGGCGAGGAGTGGAAG
Seq A exon
CAG
Seq C2 exon
GGTGTCCTTACTCATGGACGTGTCCGCCTTCTGCTCAGCAAAGGCCACTCCTGCTACCGCCCCAGGAGAACTGGAGAGAGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015082-8-7,8-6,8-5,8-4,8-3,8-2-2/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=FE(33.9=100)
A:
NA
C2:
PF0109214=Ribosomal_S6e=FE(55.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAGAAGCGAATGGCCACG
R:
GTGGCCTTTGCTGAGCAGAAG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]