DreALTA0023903-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28328071-28328806:-
Coord C1 exon
chr7:28328717-28328806
Coord A exon
chr7:28328186-28328187
Coord C2 exon
chr7:28328071-28328185
Length
2 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
GTCTTTGGTTTGCTCTTAAGAGA
3' ss Score
4.73
Exon sequences
Seq C1 exon
AAAGGGATGAAATGGCCCCCACCGCCCCAGATCACAATGCCACGTCTTTAGCAGAGGTAGACAAACGAGTCAAGCGGCGACTGCTTATGG
Seq A exon
AG
Seq C2 exon
ACGTGTGCGGTGAATAATGGAGGCTGTGACAGCACTTGTAAGGACACATCCACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTTACTCTGCAGCCTGATGGCAAATCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACAAACGAGTCAAGCGGC
R:
CGAACACCAGTGGATGTGTCC
Band lengths:
95-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]