DreALTA0024014-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000004581 | sel1l
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041001-122]
Coordinates
chr20:27090058-27091983:+
Coord C1 exon
chr20:27090058-27090229
Coord A exon
NA
Coord C2 exon
chr20:27091879-27091983
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ATTCCCTTTTCTTTTTCAAGGGA
3' ss Score
9.3
Exon sequences
Seq C1 exon
AGCACTGCTGAAAATGAAGGTGCCAATATTGTGACAGGACGTGCATATGTTCCTAAAGATGCCCAGACTGACAGCAGTACAACAGACACTGATATGGAGATCAAAGTTGATGAGATTGAAAAGGAAGACCTTCCTAGTCAGCCACCTCCACCACAGGAGCGTAGTAAAGAAG
Seq A exon
NA
Seq C2 exon
GGAAGGAGTATTCAGACTGCACTACTGAAGGCAGAGGAGATGGGAGACTGTGGTGTGCCACAACGTACGACTACAATAACGATAAGAGATGGGGCTTCTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004581-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004014=fn2=WD(100=73.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTAGTCAGCCACCTCCA
R:
TTCACAGAAGCCCCATCTCTT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]