HsaALTA0007589-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000071537 | SEL1L
Description
SEL1L ERAD E3 ligase adaptor subunit [Source:HGNC Symbol;Acc:HGNC:10717]
Coordinates
chr14:81506074-81526964:-
Coord C1 exon
chr14:81526733-81526964
Coord A exon
NA
Coord C2 exon
chr14:81506074-81506178
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
CTTCCCTTTTCTTTTCCTAGATA
3' ss Score
11.14
Exon sequences
Seq C1 exon
ACTACTTTGACATCAGATGAGTCAGTAAAGGACCATACTACTGCAGGCAGAGTAGTTGCTGGTCAAATATTTCTTGATTCAGAAGAATCTGAATTAGAATCCTCTATTCAAGAAGAGGAAGACAGCCTCAAGAGCCAAGAGGGGGAAAGTGTCACAGAAGATATCAGCTTTCTAGAGTCTCCAAATCCAGAAAACAAGGACTATGAAGAGCCAAAGAAAGTACGGAAACCAG
Seq A exon
NA
Seq C2 exon
ATAAGGAGTATGATGAATGTACATCAGATGGGAGGGAAGATGGCAGACTGTGGTGTGCTACAACCTATGACTACAAAGCAGATGAAAAGTGGGGCTTTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-6-9,6-8,6-7-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.144
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(2.9=1.3)
A:
NA
C2:
PF0004014=fn2=PD(94.3=91.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCAAGAGGGGGAAAGT
R:
GCCATCTTCCCTCCCATCTGA
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains