DreALTA0024417-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000008983 | sh3glb2a
Description
SH3-domain GRB2-like endophilin B2a [Source:ZFIN;Acc:ZDB-GENE-061201-8]
Coordinates
chr8:2722596-2728651:+
Coord C1 exon
chr8:2722596-2722696
Coord A exon
NA
Coord C2 exon
chr8:2728456-2728651
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTTTGCTGTCTCTCAGAAGGTG
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTGAATCATCTGCGCTGTCTGCGTGAGTTTGCGGAGGCGCAGGCCATGTATTACAACCAGTGTCACAAATACATGCAGGAGCTGCAGAGAGAGCTGGGCAG
Seq A exon
NA
Seq C2 exon
GTGTCCTGACTCTCTGGAGGTGAACTGTGAACCGTCCGGGAGCCCGTCAGACCTGCTGAACTCTCCGTCTCCGCTGGACTCAGACACTCTTCAGATTGAGGAGGTCCAGCCTCCTGCCAGTGGCACACGCAAAGCCCGAGTCTTGTACGACTACACTGCCGCAGACTCCAGTGAGCTCTCACTGCGCGCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008983-12-17,12-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.607
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(26.6=100),PF148651=Macin=PU(66.0=97.1)
A:
NA
C2:
PF0311413=BAR=PD(0.1=0.0),PF148651=Macin=PD(32.0=21.3),PF0001823=SH3_1=WD(100=29.3)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGGCCATGTATTACAAC
R:
CGGTTCACAGTTCACCTCCAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]