DreALTA0024777-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000095804 | si:ch211-14c17.4
Description
si:ch211-14c17.4 [Source:ZFIN;Acc:ZDB-GENE-141216-81]
Coordinates
chr8:883486-895417:+
Coord C1 exon
chr8:883486-883582
Coord A exon
NA
Coord C2 exon
chr8:895197-895417
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GGTTCTTTCCTTTCCTTCAGGAG
3' ss Score
10.73
Exon sequences
Seq C1 exon
GCTCTGCAGCGAAACGCTGAGGTGATTGGAAGACAGGAAGAGGATCTGAGCGCTTCCTCTTTACTCTCAGAGTTTCATCAGGACAAATACCCAGAAG
Seq A exon
NA
Seq C2 exon
GAGGATAGAGGGACTGTAAACTGTCCGAACGGACCGTGAGAAAACAGGAAGTGCTCCTGAGCGCAAGAGAAAGCGAGATGAAATCTATTTACAGGGCTTTTTCTCTGGGGAAGACGGAGCCATTGTTACACAGCGAGTTTGTGCAGCGATATCCTTCCTATAGACGAGGAGACACTCAACTGCCAAAAAACGTATCTGGTCATCGTTCGGACCAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095804-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCTGAGCGCTTCCTCTT
R:
TGTTTTCTCACGGTCCGTTCG
Band lengths:
103-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]