DreALTA0033543-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000040116 | znf366
Description
zinc finger protein 366 [Source:ZFIN;Acc:ZDB-GENE-110408-46]
Coordinates
chr8:891518-897807:-
Coord C1 exon
chr8:897616-897807
Coord A exon
chr8:891628-891692
Coord C2 exon
chr8:891518-891627
Length
65 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
AATAGTTACTCTCTTTACAGCTG
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGAGTGAAGGAGCACAAGTGTCGCATCTGTGGCCGTGAGTTCACACTGCTGGCCAACATGAAGCGCCACGTTCTGATCCACACCAACATCCGCGCGTATCAGTGTGAGCTGTGCTACAAGAGCTTCGTGCAGAAACAGACGCTCAAGGCTCACATGATCGTCCACTCCGACATCAAACCCTACAAATGCAAG
Seq A exon
CTGTGTGGAAAGGAGTTTAACAGAATGCATAATCTGATGGGCCACATGCACTTGCATTCTGACAG
Seq C2 exon
CAAACCCTTCAAATGCCTTTACTGCGCCAGCAAGTTCACGCTGAAGGGGAACCTGACGCGCCACATGAAGATCAAGCACGGCATCATGGACCAGGGCCTGGATGCTCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040116-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(16.2=20.3),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCTGGCCAACATGAAG
R:
TGGCGCAGTAAAGGCATTTGA
Band lengths:
179-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]