DreALTA0026397-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000097738 | si:dkey-31n5.4
Description
si:dkey-31n5.4 [Source:ZFIN;Acc:ZDB-GENE-131121-148]
Coordinates
chr3:23090905-23095127:-
Coord C1 exon
chr3:23095046-23095127
Coord A exon
NA
Coord C2 exon
chr3:23090905-23091005
Length
0 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTGCTTTTCTCTTTTAGCAGCTG
3' ss Score
7.26
Exon sequences
Seq C1 exon
GGGGACCAGCAGCGCCACGGGGACCCATTGGACCCTACAGAATGAAAGAAAGTCTAGGTTAGGAAAAAACATCAGTGTCCAT
Seq A exon
NA
Seq C2 exon
CTGTTGGAGGAGAGTTTCCAAACCTGTGCCAACTTGTCTCCAAAGGCTCACGCATGCAGAACGTGAAAGGCCCAGTTGGTCTAATGCACATCCAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097738-5-10,5-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCATTGGACCCTACAGA
R:
GGAGACAAGTTGGCACAGGTT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]