DreEX0070577 @ danRer10
Exon Skipping
Gene
ENSDARG00000097738 | si:dkey-31n5.4
Description
si:dkey-31n5.4 [Source:ZFIN;Acc:ZDB-GENE-131121-148]
Coordinates
chr3:23089722-23098322:-
Coord C1 exon
chr3:23098222-23098322
Coord A exon
chr3:23095046-23095127
Coord C2 exon
chr3:23089722-23091005
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTCCATTCTTTCCAGGGG
3' ss Score
9.38
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TAGGTCCGCGGGCACCACCAGCACCGGGCTCACCACGGGGTCCTCTCTTGCCTTCCTCACCAGGGGGACCAGGGGGACCCTGAACTCCTTGGGCACCCTAG
Seq A exon
GGGGACCAGCAGCGCCACGGGGACCCATTGGACCCTACAGAATGAAAGAAAGTCTAGGTTAGGAAAAAACATCAGTGTCCAT
Seq C2 exon
CTGTTGGAGGAGAGTTTCCAAACCTGTGCCAACTTGTCTCCAAAGGCTCACGCATGCAGAACGTGAAAGGCCCAGTTGGTCTAATGCACATCCAGACTAAGCAAAAAGTTCTTCACCATTCCAGAAGAATATAAAAACTATGCTTCAGGCGACAGGACAATGCCTCATAGGAAAAAAATTCATGACACAATTATTTCTATTGCTGCCTCCCTCCACAGCATCACAAATACCCTTGCCTCTTCACTTTGCACCCACTACCCTCCAGCAAAGCTTGGAAAGTTAGAAAAGTTATACTTACGATCGTCCTCGCCTTGTCCTCTTGCCAAAAGCACCGTTGCGCTGAGCAACAGCGCCAGCCGAATATCCACAAAGCTGAACATGTCTAAATATTAGACATGTAGACTCTTTGAGGCGAGGGAAGTTCTGTTTTCCTTTAGACTCCAATCATACACGGTAGGGTCCGGTCTTCTGTGACTCCAATCCAGACCCCAGCAGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097738-'3-10,'3-8,5-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGAACTCCTTGGGCA
R:
TCCTGTCGCCTGAAGCATAGT
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]