DreEX0070576 @ danRer10
Exon Skipping
Gene
ENSDARG00000097738 | si:dkey-31n5.4
Description
si:dkey-31n5.4 [Source:ZFIN;Acc:ZDB-GENE-131121-148]
Coordinates
chr3:23095071-23098494:-
Coord C1 exon
chr3:23098419-23098494
Coord A exon
chr3:23098222-23098322
Coord C2 exon
chr3:23095071-23095127
Length
101 bp
Sequences
Splice sites
3' ss Seq
GGTACATACACGTTCACCAGTAG
3' ss Score
-0.47
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTAGACTTACTCTTGGACCTGCAGCTCCATCAGCACCAGGGAAACCACGAGCACCAGGAGCACCCTGCACAGACAG
Seq A exon
TAGGTCCGCGGGCACCACCAGCACCGGGCTCACCACGGGGTCCTCTCTTGCCTTCCTCACCAGGGGGACCAGGGGGACCCTGAACTCCTTGGGCACCCTAG
Seq C2 exon
GGGGACCAGCAGCGCCACGGGGACCCATTGGACCCTACAGAATGAAAGAAAGTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097738-'1-8,'1-6,3-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTACTCTTGGACCTGCAGC
R:
CTAGACTTTCTTTCATTCTGTAGGGT
Band lengths:
130-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]