DreALTA0027129-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000005690 | slc25a23a
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
Coordinates
chr1:54310529-54320095:-
Coord C1 exon
chr1:54319467-54320095
Coord A exon
chr1:54310653-54310655
Coord C2 exon
chr1:54310529-54310652
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGTGTATGCCCTATATTCAGCAG
3' ss Score
4.21
Exon sequences
Seq C1 exon
GCGCGATTTTCTCCTCGTCTCCAAATGTCACGGTACGAATGGACAGCAAACGGCGGCACGCGCGTGGATTTCCTGGAAGTACCGCATTATTATTCGTGATTGCGAAAGCTTCCTGGTTCCCGTAGTAGCGATACACAGCTGTTTGACGCCGTCTGCCAAACGCGACTGTCAGGACGCAACTCTCAGAACGCGACTCTCAGAACGCGACTCTGAGGACGCGACGCGAGGGGTTTTATATTTCGCCTTTTTCTGGACGCATTCGGAAGTCTTTTCCGCCGGAGCCGATGTGTATACGAGGGTGACCGCGCGTGGATCTCATCATGTGGCCGCGGGGATGGACCCAGGCGCGCTGTCAGGACAGCGGGGTGGACCAAGACCGCGAGCAGCTCTGGGCCGAACTCTTCCAGCAGCTGGACCTCAATAAAGACGGCCGGGTGGATGTCAACGAGCTGCGGATCGGACTCGCAGCCCGCGGGCTATCCTGGAGCTCGGTGGAGGAG
Seq A exon
CAG
Seq C2 exon
ATTGTACGAGCGGGAGACATCAATCACGACGGTCAGCTGGACTTCGAAGAGTTTACCGAGTACCTGCGCTCACATGAGAAACGCCTTAGACTCATGTTTCGCAGCCTGGACCGAAACAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005690-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.2=71.7)
A:
NA
C2:
PF134991=EF-hand_7=PD(31.8=50.0),PF134991=EF-hand_7=PU(23.8=35.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCTGGAGCTCGGTGGAG
R:
GCGCAGGTACTCGGTAAACTC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]