DreALTA0027430-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40404103-40407046:+
Coord C1 exon
chr6:40404103-40404211
Coord A exon
NA
Coord C2 exon
chr6:40406946-40407046
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
TTCTCTTTCTCTCCTCACAGGAG
3' ss Score
12.36
Exon sequences
Seq C1 exon
GACTGATCCCTCTGACATTAACATATCTGATGAAATGTCTAAAACTACTGTCTGGAAATCCCTCAATTCCAATAACATGGACACACAACGCGCAAGCACACATAAAAAG
Seq A exon
NA
Seq C2 exon
GAGGTACCGTGAAGTATCCCTGCAGAAAGAAGAAATTACCTTCTTAGCGACGGTCGTTTGAAATTCGGCTGACTTCGAGAAGCAGCCGCGTGCTAAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-25-26,25-25-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGATCCCTCTGACATTAACA
R:
CGGCTGCTTCTCGAAGTCAG
Band lengths:
197-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]