DreEX0073109 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40403807-40408398:+
Coord C1 exon
chr6:40403807-40403919
Coord A exon
chr6:40404103-40404211
Coord C2 exon
chr6:40406946-40408398
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTCCTCAACCTGTTGTCCAGGAC
3' ss Score
4.97
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
Exon sequences
Seq C1 exon
CAGGAATCACAGGAGATGCTGGTGGATGAATCTGGGGAATCGGACAACAAAGACACAGTGCAGATCCCAATGGAGAGCAAACCTCTACACTCTCCTCGAACCCCAGACCCAAG
Seq A exon
GACTGATCCCTCTGACATTAACATATCTGATGAAATGTCTAAAACTACTGTCTGGAAATCCCTCAATTCCAATAACATGGACACACAACGCGCAAGCACACATAAAAAG
Seq C2 exon
GAGGTACCGTGAAGTATCCCTGCAGAAAGAAGAAATTACCTTCTTAGCGACGGTCGTTTGAAATTCGGCTGACTTCGAGAAGCAGCCGCGTGCTAAAAACACACAGATGTTACAGTAGTTCACTTCTTCCCATGTTTCTCACACACATGCGTGTTTATGTATAGCTGTGTGAGATATATTGGTGTCTCAGTGTGTGTGTGTGTGTGTGAATATGTGCGACATATTCTCCAACCAAATCCAGGTTATTTTCAATGTTTAGTTGGGTTTTAGCAGACATAGGCGTCTCTGTGCTGTGCTGTACTGTACACGTTTTTTGTTTTTCGTTCGTTGTCTGGTTCTAAGTTGTTTAATAGCTGTTTAAATGTTCTCATTTTAACTATATACTTGTAGATAATACTGTATACGTGTGTCAAACCGTCAAAGCAACAAGTTTGTGTGTTTAAGCCAAACATCCGATCAAAATAATAACCTCAGTTGAAACTCTTTTGTGCCAGTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGATCCCAATGGAGAGC
R:
ACACACACACACTGAGACACC
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]