GgaEX7012000 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:850509-854944:-
Coord C1 exon
chrLGE22C19W28_E50C23:854844-854944
Coord A exon
chrLGE22C19W28_E50C23:854534-854645
Coord C2 exon
chrLGE22C19W28_E50C23:850509-854357
Length
112 bp
Sequences
Splice sites
3' ss Seq
AATTGGTTCTGTGATTGCAGAAC
3' ss Score
4.59
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGTCTCAGCAGATGATGGAAGCTGCTGCTGCAAACTCAGTCCAGCTGAGCCTGGGGAAGACGAGCTACGTGGGTGTCCCCAAGCAGAACAGCAAGGACAG
Seq A exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAGGTAAAAG
Seq C2 exon
TTGTCCTCTTTAGGGATCTTGGCTTTGAAGGAGAGGAGCAAGAACGTGACTCAGGGATGAGCCAGCGCAGCTATGTTGGGTGGAGGAAGCAAACACGCACCCTCCCTGGTTCTCTCCTCCAAGTAGCAGGATTCCCATTAAAGCCATTCAAGACGTTTCCAGTTATCCTTGGTGTGCTTCAGGCATTCAGTATCTCTAGACCAGCAATCTGAGGTGCACCTCGCTGTCAGTGGGAGCTCGGTGTTGCTCAGCCTCCGTGTGTACGTGTGTGTGTGCGTGTGTTGTCGCGGTCTGTGGTGGTAGAGGGGCAGCTACCGCTTGGTCATTCAGTGCTATCTAGTTTTTTTTAATATCTAATCCCCCCCTCCCCTCCCCCATTTCCCTTTTTCTGTCCAAATATAAACTCTGAATGTACAAAATAACTTTCTGTTATATTTGACGCATTCTCCACTTCCTTCTTCGTGACCGCCAGATTTTTGTTTCGGTTTGGGGTCCTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'27-36,'27-35,29-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.345 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCAGAACAGCAAGGAC
R:
GTGCACCTCAGATTGCTGGTC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]