RnoEX6034115 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142461311-142464043:+
Coord C1 exon
chr7:142461311-142461402
Coord A exon
chr7:142462675-142462770
Coord C2 exon
chr7:142463842-142464043
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTCTGAGCTTTGGTTTCAGATG
3' ss Score
6.84
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGGCTGAGAAGATGTTGGATATTGGGGGTGATAAGTTCCCCCTGGAAAGCAGGAAGTTGCTAAGTAGTCCTGGCAAGAACAACAGCTTCAG
Seq A exon
ATGTGACCCTTCTGAGATTAATATATCAGATGAAATGCCTAAAACCACAGTCTGGAAGGCTCTCAGCATAAATTCTGGAAACACGAAAGAAAAAAG
Seq C2 exon
CCCCTTCAATTGAGAGTCTCCGCTGGGTGGAAGACTTGGGCCATGAGGTGCCTCGGAGAAGTTCTGGGCTTTGAGAAAATGGCGAGTCTCTCCGGGAAGAAGCCGGGCTGAGTCTGGCCCTGTTCTTGGTCATCTCGAAGCCACATGGAAGCATTCAGTCACTCCCGGTGTGCGTTTGGAGGGTATCCAGCTACCCCACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'37-35,'37-34,38-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.212 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGCAAGAACAACAGCT
R:
ATGCTTCCATGTGGCTTCGAG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]