GgaEX6047093 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE22C19W28_E50C23:840096-840738:-
Coord C1 exon
chrE22C19W28_E50C23:840638-840738
Coord A exon
chrE22C19W28_E50C23:840335-840439
Coord C2 exon
chrE22C19W28_E50C23:840096-840151
Length
105 bp
Sequences
Splice sites
3' ss Seq
AATTGGTTCTGTGATTGCAGAAC
3' ss Score
4.59
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GAGTCTCAGCAGATGATGGAAGCTGCTGCTGCAAACTCAGTCCAGCTGAGCCTGGGGAAGACGAGCTACGTGGGTGTCCCCAAGCAGAACAGCAAGGACAG
Seq A exon
AACTGACCCTTCTGAGATCAACATCTCAGATGAAATGTCAAAGACAACTGTGTGGAAGGCTCTCACCATGAATGCAGAAAAACTCTGAATCCGAGGAGGAAAAAG
Seq C2 exon
TTGTCCTCTTTAGGGATCTTGGCTTTGAAGGAGAGGAGCAAGAACGTGACTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.345 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGCAGATGATGGAAGCTG
R:
CCCTGAGTCACGTTCTTGCTC
Band lengths:
154-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]