HsaEX6066565 @ hg19
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:11034]
Coordinates
chr12:51897813-51902980:+
Coord C1 exon
chr12:51897813-51897904
Coord A exon
chr12:51899619-51899714
Coord C2 exon
chr12:51901210-51902980
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCCTAATGATTGATTTCAGATG
3' ss Score
6.13
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GAGGCTGAGAAAATGTTAGAAATTGGGGGAGACAAGTTTCCCTTAGAGAGCAGGAAGTTACTAAGTAGTCCTGGAAAGAACATCAGTTGCAG
Seq A exon
ATGTGACCCCTCTGAGATTAATATATCTGATGAAATGCCTAAAACTACAGTTTGGAAAGCTCTCAGTATGAATTCTGGAAATGCAAAGGAAAAGAG
Seq C2 exon
TCTCTTCAACTAAGAGTCTTTGCTGGGATGGAAGATTTGGGCCGTGTGGTGCCTCAGGGAAGTTCTGGTTACAGAGAAAATGGCGAGTCTCTCAGAGAAGAAGCAAGACCAAGTCTGGCCCTGTCCTTGGTCATCTCAAAGCCATGCCGAAGCATTCAGTTATTCTTGGTGTGCATTGGAAGGCATCCAGCTATCCCCATACCAGCAGCCAGTCACCAGATGTGAATGTGGAAGCAGAAGACCACCTCCTGTTGGTTCTTCTCCTCTTCCTTCTTTTTCTCTTTAGAACGGCCACCATTGAAGACCTAGCTTCCCATTTTCCAGACGTTTTCTCTGAAATTCTCTGCTGGCCTGCCAAGCCATATGGATTCATTCTGCCACTGAGGAGTCCTTCAGTGAGGTCCCTCTTCCTAAAGGACAGAGTGGGGAGTAGGAGGGGAACAGAGAGGACATCCTCTCTGGCTCTCCAGTGCTCTTAGTGTCTACAGGCTCCTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.121 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAAGAACATCAGTTGCA
R:
TCGGCATGGCTTTGAGATGAC
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)