DreALTA0027815-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50551375-50551837:-
Coord C1 exon
chr5:50551560-50551837
Coord A exon
chr5:50551454-50551464
Coord C2 exon
chr5:50551375-50551453
Length
11 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTGTTTTTTAAATGTCTTAGTTT
3' ss Score
6.34
Exon sequences
Seq C1 exon
ACACATGACGTACAAGTAACGTACAATAGTTTTATCAAGGTATAGAGTTATTGATTTGTAGAAATATCATTCCTATTTGTAATCAACCTTTAAAAGTAGCACTTCGATTTAATTTGAATAAGTTCAATTGTAGTTTACAACCCCCATGTGCGCTCTGCGTTTATGTGTATGTAAGTTAGACGAAGATTTAGGTGAGAAACGTGTGAAGTGATGCTGCAGGATTCAGCAGGTTTCTCTTATAGAAGAGCTGCAGAATGATGTTTTAACAAAAGGGTAAT
Seq A exon
TTTTTCTTTAG
Seq C2 exon
GCTTAAAGCAAATACTTCAGGCATGGGACGGGGTTTCAATCGTTCACGGATCCGCAAATGTGACCTAATAATGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673-2-1,2-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGCTGCAGGATTCAGC
R:
CCGTCCCATGCCTGAAGTATT
Band lengths:
103-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]