DreEX0074094 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50549850-50551837:-
Coord C1 exon
chr5:50551560-50551837
Coord A exon
chr5:50551375-50551453
Coord C2 exon
chr5:50549850-50549988
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTAGTTTTTCTTTAGGCT
3' ss Score
5.44
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ACACATGACGTACAAGTAACGTACAATAGTTTTATCAAGGTATAGAGTTATTGATTTGTAGAAATATCATTCCTATTTGTAATCAACCTTTAAAAGTAGCACTTCGATTTAATTTGAATAAGTTCAATTGTAGTTTACAACCCCCATGTGCGCTCTGCGTTTATGTGTATGTAAGTTAGACGAAGATTTAGGTGAGAAACGTGTGAAGTGATGCTGCAGGATTCAGCAGGTTTCTCTTATAGAAGAGCTGCAGAATGATGTTTTAACAAAAGGGTAAT
Seq A exon
GCTTAAAGCAAATACTTCAGGCATGGGACGGGGTTTCAATCGTTCACGGATCCGCAAATGTGACCTAATAATGTAAAAG
Seq C2 exon
GTTTCACCTTGTCCAAAAATGGCATCTGACGACTTACGAGCGCAGAGGGATAAAATACAGAGGGAGATTTTGGCTCTGGAGAGCACTTTAGGTGCAGACAGCAGCATCGCAGACCAGCTGTCATCGGACAACAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.634
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTACAACCCCCATGTGCG
R:
TCGTCAGATGCCATTTTTGGACA
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]